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It can be useful to include links to e-mail messages or even search queries in your org-mode files. mu4e supports this with the org-mu4e module; you can set it up by adding it to your configuration:
(require 'org-mu4e)
this expects org-mode 8.x. If you have an older version, you can try:
(require 'org-old-mu4e)
After this, you can use the normal org-mode mechanisms to store links: M-x
org-store-link stores a link to a particular message when you are in Message view. When you are in Headers view, M-x org-store-link links to the
query if org-mu4e-link-query-in-headers-mode
is non-nil
, and
to the particular message otherwise.
You can insert this link later with M-x org-insert-link. From org-mode, you can go to the query or message the link points to with either M-x org-agenda-open-link in agenda buffers, or M-x org-open-at-point elsewhere - both typically bound to C-c C-o.